Protein ATR map

Identifiers
ataxia telangiectasia and Rad3 related
HUGO:ATR, HGNC:882, ENTREZ:545, UNIPROT:Q13535

Maps_Modules
HMC:SUSTAINING_PROLIFERATIVE_SIGNALLING
 Cell Cycle DNA Repair  map  / G1_S_CHECKPOINT  map
 Cell Cycle DNA Repair  map  / S_PHASE_CHECKPOINT  map
 Cell Cycle DNA Repair  map  / G2_M_CHECKPOINT  map

References
For S-phase checkpoint
PMID:11877377, PMID:15459660, PMID:17384638, PMID:17102137, PMID:17116885, PMID:17296725, PMID:19793801, PMID:17582221, PMID:18677104
HCLK2*/FANCM/FAAP24/active ATR complex inhibits S-phase
PMID:19282663, PMID:19622404
For ATR/ATRIP/CHEK1/Tim* S-phase checkpoint
PMID:15798197

ATR|​pho|​active@Nucleus

References
ce_re37( Cell Cycle DNA Repair  map ):
PMID:16332722, PMID:15136767
ATR binds stalled fork and phosphorylates CHK1 that activates checkpoint, stops cell cycle
ce_re33:( Cell Cycle DNA Repair  map ) PMID:15485915
ce_re43:( Cell Cycle DNA Repair  map ) PMID:16731533
ce_re49:( Cell Cycle DNA Repair  map ) PMID:19788416
ce_re71( Cell Cycle DNA Repair  map ):
For inactivation of EXO1 by 53BP1-mediated phosphorylation:
PMID:18756267, PMID:15867354
ATM and ATR phosphorylate EXO1 and lead to EXO1 ubiquitination and degradation:
PMID:18048416, PMID:11438669, PMID:20019063
ce_re90( Cell Cycle DNA Repair  map ):
PMID:9488723, PMID:19772495
PMID:17303408
ce_re110( Cell Cycle DNA Repair  map ):
Phosphorylation by ATM and ATR at T847, S327
Phosphorylation at S327 by ATM and ATR are essential for shift from A_NHEJ to HR
Phosphorylation by CDC2(CDK1) in cell cycle dep manner to shift from C_NHEJ ot HR at: Ser 267
This phosphorylation allows resection that initiates HR and blocks binding of Ku70/Ku80 complex that initiates C_NHEJ.
PMID:19357644, PMID:15485915, PMID:19490890, PMID:18716619 (for CDK-dep phosph), PMID:20051983
BRCA1 and CtIP interactions make shift from A_NHEJ and C_NHEJ toward HR
Resected DNA in HR is a positive trigger for amplification of the HR pathway (positive loop):
PMID:20051983
Only when CDKs are fully active, this fully activates HR during S and G2 phases:
PMID:18511906, PMID:18716619
ce_re132:( Cell Cycle DNA Repair  map ) PMID:19841479, PMID:19793861
ce_re160( Cell Cycle DNA Repair  map ):
PMID:18931676
PMID:19686080
Link between cell cycle and activation of Fanconi pathway
ce_re186( Cell Cycle DNA Repair  map ):
PMID:18931676, PMID:19686080
ce_re187( Cell Cycle DNA Repair  map ):
NBS1 is required for FANCD2 phosphorylation and relocation into the FA core complex:
PMID:14988723
ce_re199( Cell Cycle DNA Repair  map ):
HCLK2*/FANCM/FAAP24/active ATR complex inhibit S-phase:
PMID:19282663, PMID:19622404, PMID:18995830
ce_re205( Cell Cycle DNA Repair  map ):
Phosphorylation of NBS1 by ATR in response to crosslink-activation of S phase checkpoint
PMID:15136767, PMID:14988723
ce_re206( Cell Cycle DNA Repair  map ):
Phosphorylation of NBS1 bt ATR in responce to crosslink-activation of S phase checkpoint
PMID:15136767
Formation of the complex for crosslink-activation of S phase checkpoint. FA core complex activates the reaction to stop cell cycle propagation:
ce_re235( Cell Cycle DNA Repair  map ):
ATR phosphorylates XPA and activates NER during S-phase in response to damaged DNA, but not during other cc phases:
PMID:16540648, PMID:19004803
ce_re260( Cell Cycle DNA Repair  map ):
DNA with O6-methylguanine adducts, MutSalpha and MutLalpha activate ATR/ATRIP and BER pathways performs the repair:
PMID:16713580, PMID:18543256
Damaged DNA triggers ATR/ATRIP complex activation
ce_re315:( Cell Cycle DNA Repair  map ) PMID:16885023, PMID:17303408
ce_re408:( Cell Cycle DNA Repair  map ) PMID:9858600

ATR@Nucleus

References
ce_re37( Cell Cycle DNA Repair  map ):
PMID:16332722, PMID:15136767
ATR binds stalled fork and phosphorylates CHK1 that activates checkpoint, stops cell cycle


Modifications:
In compartment: Nucleus
  1. ATR@Nucleus map
  2. ATR|​pho|​active@Nucleus map
Participates in complexes:
In compartment: Nucleus
  1. ATRIP:​ATR|​pho@Nucleus map
  2. ATRIP:​ATR|​pho:​CLSPN|​pho@Nucleus map
  3. ATR|​pho:​FAAP24*:​FANCM:​HCLK2*@Nucleus map
  4. ATRIP:​ATR|​pho:​CHEK1|​pho:​CLSPN|​pho:​HCLK2*@Nucleus map
  5. ATRIP:​ATR|​pho:​CLSPN|​pho:​RAD17|​pho:​TOPBP1@Nucleus map
  6. ATR|​pho:​FANCD2|​K561_ubi|​pho:​MRE11*:​NBS1*|​S343_pho:​RAD50@Nucleus map
  7. ATRIP:​ATR|​pho:​CHEK1|​pho:​CLSPN|​pho:​TIM1*:​TIPIN@Nucleus map
  8. ATRIP:​ATR|​pho:​CHEK1|​pho:​CLSPN|​pho:​PCNA|​K164_ubi:​TIM1*@Nucleus map
Participates in reactions:
As Reactant or Product:
  1. HCLK2*@Nucleus map + FAAP24*@Nucleus map + FANCM@Nucleus map + ATR|​pho|​active@Nucleus map map ATR|​pho:​FAAP24*:​FANCM:​HCLK2*@Nucleus map
  2. FANCD2|​K561_ubi|​pho@Nucleus map + MRE11*:​NBS1*|​S343_pho:​RAD50@Nucleus map + ATR|​pho|​active@Nucleus map map ATR|​pho:​FANCD2|​K561_ubi|​pho:​MRE11*:​NBS1*|​S343_pho:​RAD50@Nucleus map
  3. ATR|​pho|​active@Nucleus map + ATRIP@Nucleus map map ATRIP:​ATR|​pho@Nucleus map
  4. TOPBP1@Nucleus map + ATRIP:​ATR|​pho@Nucleus map + CLSPN|​pho@Nucleus map + RAD17|​pho@Nucleus map map ATRIP:​ATR|​pho:​CLSPN|​pho:​RAD17|​pho:​TOPBP1@Nucleus map
  5. ATR@Nucleus map map ATR|​pho|​active@Nucleus map
  6. ATRIP:​ATR|​pho@Nucleus map + CLSPN|​pho@Nucleus map + RPA1:​RPA2:​RPA3@Nucleus map map ATRIP:​ATR|​pho:​CLSPN|​pho@Nucleus map
  7. HCLK2*@Nucleus map + CLSPN|​pho@Nucleus map + ATRIP:​ATR|​pho@Nucleus map + CHEK1|​pho|​active@Nucleus map map ATRIP:​ATR|​pho:​CHEK1|​pho:​CLSPN|​pho:​HCLK2*@Nucleus map
  8. TIM1*@Nucleus map + CLSPN|​pho@Nucleus map + PCNA|​K164_ubi@Nucleus map + ATRIP:​ATR|​pho@Nucleus map + CHEK1|​pho|​active@Nucleus map map ATRIP:​ATR|​pho:​CHEK1|​pho:​CLSPN|​pho:​PCNA|​K164_ubi:​TIM1*@Nucleus map
  9. ATRIP:​ATR|​pho:​CLSPN|​pho@Nucleus map + TIPIN@Nucleus map + TIM1*@Nucleus map + CHEK1|​pho|​active@Nucleus map map ATRIP:​ATR|​pho:​CHEK1|​pho:​CLSPN|​pho:​TIM1*:​TIPIN@Nucleus map
As Catalyser:
  1. CTIP*|​emp@Nucleus map map CTIP*|​emp|​S372_pho|​T847_pho|​S267_pho@Nucleus map
  2. S phase@Nucleus map map G2 phase@Nucleus map
  3. G2 phase@Nucleus map map M phase@Nucleus map
  4. SMARCAL1@Nucleus map map SMARCAL1|​pho@Nucleus map
  5. FANCI@Nucleus map map FANCI|​pho@Nucleus map
  6. gDamaged_DNA*@Nucleus map map gRepaired_DNA*@Nucleus map
  7. FANCA@Nucleus map map FANCA|​pho@Nucleus map
  8. FANCD2@Nucleus map map FANCD2|​pho@Nucleus map
  9. FANCG@Nucleus map map FANCG|​S7_pho@Nucleus map
  10. NBS1*@Nucleus map map NBS1*|​S343_pho@Nucleus map
  11. XPA@Nucleus map map XPA|​S196_pho@Nucleus map
  12. RAD17@Nucleus map map RAD17|​pho@Nucleus map
  13. CHEK1@Nucleus map map CHEK1|​pho|​active@Nucleus map
  14. ORC1*:​ORC2*:​ORC3*:​ORC4*:​ORC5*:​ORC6*@Nucleus map + MCM2:​MCM3:​MCM4:​MCM5:​MCM6:​MCM7@Nucleus map + CDT1@Nucleus map + CDC6@Nucleus map + CDC45@Nucleus map + POLA*@Nucleus map + PRIM*@Nucleus map + RPA1@Nucleus map + RPA2@Nucleus map + RPA3@Nucleus map map CDC45:​CDC6:​CDT1:​MCM2:​MCM3:​MCM4:​MCM5:​MCM6:​MCM7:​ORC1*:​ORC2*:​ORC3*:​ORC4*:​ORC5*:​ORC6*:​POLA*:​PRIM*@Nucleus map
  15. CTBP*@Nucleus map map CTBP*|​S181_pho|​T179_pho|​S185_pho@Nucleus map
  16. BRCA1@Nucleus map map BRCA1|​S988_pho|​S1387_pho|​S1423_pho|​S1497_pho|​S1524_pho|​active@Nucleus map
  17. PARP1@Nucleus map map PARP1|​PolyADPribose_unk|​pho@Nucleus map
  18. RPA2@Nucleus map map RPA2|​pho@Nucleus map
  19. No DNA replicarion@Nucleus map map DNA replicarion@Nucleus map
  20. SMC1*@Nucleus map map SMC1*|​S957_pho|​S966_pho@Nucleus map
  21. SMC3@Nucleus map map SMC3|​S1083_pho@Nucleus map
  22. RAD1@Nucleus map + RAD9*|​pho@Nucleus map + HUS1@Nucleus map map HUS1:​RAD1:​RAD9*|​pho@Nucleus map
  23. HUS1:​RAD1:​RAD9*|​pho@Nucleus map + RAD17@Nucleus map + RFC*@Nucleus map map HUS1:​RAD1:​RAD17:​RAD9*:​RFC*@Nucleus map
  24. CLSPN@Nucleus map map CLSPN|​pho@Nucleus map
  25. MDM2@Nucleus map map MDM2|​pho@Nucleus map
  26. gDeaminated_alkylated_mismatched_base*@Nucleus map map gBER_M-glyc_DNA_st2*@Nucleus map + Base@Nucleus map
  27. SIAH*@Nucleus map map SIAH*|​pho@Nucleus map
  28. PARP2@Nucleus map map PARP2|​unk|​pho@Nucleus map
  29. EXO1@Nucleus map map EXO1|​S692_pho|​S372_pho|​S567_pho|​S587_pho@Nucleus map
  30. CHEK2@Nucleus map map CHEK2|​pho|​active@Nucleus map
  31. H2AFX@Nucleus map map H2AFX|​S139_pho@Nucleus map