Phenotype S phase map
S phase@Cytosol

References
em_emtc_emtc_re271( EMT Senescence  map ):
PMID:15082531
Degradation of c-Myb protein by Wnt-1 signal via the pathway involving TAK1, HIPK2, and NLK leads to G1 cell cycle arrest.
PMID:23140366
p16INK4a activates the pRB tumor suppressor, which silences certain proproliferative genes(E2F) by heterochromatinization, thereby instituting a stringent arrest of cell proliferation
PMID:19440234
p21 suppresses E2F1-dependent Wnt4 expression, thereby controlling cellular growth.

S phase@Nucleus

References
ce_re115( Cell Cycle DNA Repair  map ):
PMID:16581787,
For inhibition of S-checkpoint by ATM:
PMID:15175241
Inhibition of Sphase by MRE complex:
PMID:17713585
By CycE*/CDK2: G1/S transition
By CycD*/CDK2/CIp/KIP: checkpoint G1/S
ce_re114( Cell Cycle DNA Repair  map ):
PMID:18171670, PMID:20064462
For regulation of HR by cell cycle. CDK1 is essential to switch cells from C_NHEJ to HR during S/G2 phase: PMID:15496928
The complex BRCA2:FANCC:FANCG:XRCC3 activates HR:
PMID:18212739
For role of BLM:TOP3:RMI1 complex in the HR resection step:
PMID:19490890
For central role of the MRN complex and CtIP in the resection of the DNA that turns on the HR and off C_NHEJ:
PMID:20021983
For inhibition of HR by RECQ5:
PMID:19270065
For role of CDC2 (CDK1) in DNA resection initiation in S/G2 phase, HR initiation:
PMID:15655342, PMID:15549137, PMID:15496928
RNF8:MDC1 complex recruit HR-related proteins by this shifting from C_NHEJ to HR:
PMID:18001825
SUMOlated PCNA recognizes stalled replication fork and blocks homologous recombination, re-orients toward TLS
PMID:19217833
ce_re119( Cell Cycle DNA Repair  map ):
PMID:15175241, PMID:12086603
For inhibition of S-checkpoint by HCLK2/FAAP24/ATR/FANKM complex:
PMID:19282663, PMID:19622404, PMID:18995830
For interaction between SNM1B and ATM to mediate S-phase checkpoint in response to ICL (intra-chromatide lesion):
PMID:18469862
Resected DNA is a triger for activating the S-phase checkpoint and moving from G1 to S to G2:
PMID:20051983, PMID:16805667
For inhibition of S to G2 propagation and activation of S-phase checkpoint by complex PCNA:CtIP:
PMID:19342888
ATR kinase activation mediated by MutSalpha and MutLalpha in response to cytotoxic O6-methylguanine adducts. O6-methylguanine adducts recognized by MutSalpha, MutLalpha and BER pathways performs the repair. ATR/ATRIP S phase arrest is activated:
PMID:16713580
For role of TIM1*/TIPIN in S-phase checkpoint, stalled replication forks stabilisation and DNA repair during S-phase:
PMID:17102137, PMID:17116885, PMID:17296725, PMID:19793801, PMID:17582221
For inhibition of S-phase by ATR/ATRIP/CHEK1/CLSPN/HCLK2* complex:
PMID:19793801, PMID:17384638
For ATR/ATRIP/CHEK1/Tim* S-phase checkpoint
PMID:15798197
Formation of the complex for crosslink-activation of S phase checkpoint. FA core complex activates the reaction to stop S-phase propagaton:
PMID:14988723, PMID:15136767
ce_re235( Cell Cycle DNA Repair  map ):
ATR phosphorylates XPA and activates NER during S-phase in response to damaged DNA, but not during other cc phases:
PMID:16540648, PMID:19004803
ce_re236( Cell Cycle DNA Repair  map ):
Recruitment of all components as POLH and RAD6/RAD18 that ubiguitinate PCNA all together activate TLS:
PMID:16824193
ce_re252( Cell Cycle DNA Repair  map ):
Requirement for functional DNA polymerase eta in genome-wide repair by NER of UV-induced DNA damage during S phase:
PMID:20457011
Link between Fanconi and NER
PMID:22615860
ce_re489( Cell Cycle DNA Repair  map ):
Reaction (id=re180, name=; CellCycle_DNArepair_18_12_2010_Version3.xml)
Phosphorilated Rev1 is the activator and the modulator of the TLC pathway in response to DNA damage and by cell cycle regulation
PMID:17035102
Several TLS polymerases participate in Fanconi in combination with HR and NER
PoL iota bypasses T-T adducts and dA-N6_BPDE, but only with assistance of Polkappa or Pol zeta:
PMID:15189446, PMID:12466554 (major)
Depending on the DNA damage, different TLS polymerases will be activated:
PMID:19225445
REV1 interacts with many TLS polymerases:
PMID:14657033
Polyubiquitination of PCNA activates prone-free mechanisms of lesions by-pass
PMID:19217833, PMID:18157158
For TLS
PMID:19258535
FA core complex regulates REV1 and activated TLS
PMID:22266823
ce_re568:( Cell Cycle DNA Repair  map ) SSB convert to DSB in S phase during DNA replication
ce_re577:( Cell Cycle DNA Repair  map ) Bulky adducts convert to ICL during DNA replication in S phase
ce_re587:( Cell Cycle DNA Repair  map ) reactionType:is.a

Modifications:
In compartment: Cytosol
  1. S phase@Cytosol map
In compartment: Nucleus
  1. S phase@Nucleus map
Participates in complexes:
    Participates in reactions:
    As Reactant or Product:
    1. G1 phase@Nucleus map → map S phase@Nucleus map
    2. S phase@Nucleus map → map G2 phase@Nucleus map
    3. Late G1 phase@Cytosol map → map S phase@Cytosol map
    4. S phase@Cytosol map → map G2 phase@Cytosol map
    5. S phase@Cytosol map → map Senescence@Cytosol map
    6. su_akt1_s_akt2_s95 → map S phase@Nucleus map
    7. S phase@Nucleus map → map su_akt1_s_akt2_s114
    As Catalyser:
    1. gHR_DNA_st1*@Nucleus map → map gHR_DNA_st2*@Nucleus map
    2. XPA@Nucleus map → map XPA|​S196_pho@Nucleus map
    3. RAD18:​RAD6*@Nucleus map + POLH@Nucleus map + REV1@Nucleus map → map POLH:​RAD18:​RAD6*:​REV1@Nucleus map
    4. gGG-NER_DNA_st1*@Nucleus map → map gGG-NER_DNA_st2*@Nucleus map
    5. gDeaminated_alkylated_mismatched_base*@Nucleus map → map gC_NHEJ_DNA_st1*@Nucleus map
    6. gDeaminated_alkylated_mismatched_base*@Nucleus map → map gA_NHEJ_DNA_st1*@Nucleus map
    7. gDeaminated_alkylated_mismatched_base*@Nucleus map → map gHR_DNA_st1*@Nucleus map
    8. gOxidized_ring-saturated_hydrolysed_base*@Nucleus map → map gC_NHEJ_DNA_st1*@Nucleus map
    9. gOxidized_ring-saturated_hydrolysed_base*@Nucleus map → map gA_NHEJ_DNA_st1*@Nucleus map
    10. gOxidized_ring-saturated_hydrolysed_base*@Nucleus map → map gHR_DNA_st1*@Nucleus map
    11. gTLS_DNA_st1*@Nucleus map → map gTLS_DNA_st2*@Nucleus map
    12. gSingle_strand_breaks_SSB*@Nucleus map → map gDouble_strand_breaks_DSB*@Nucleus map
    13. gBbulky_adducts*@Nucleus map → map gInterstrand_crosslinks_ICL*@Nucleus map
    14. gInterstrand_crosslinks_ICL*@Nucleus map → map gStalled_replication_fork*@Nucleus map
    15. gIntrastrand_crosslinks*@Nucleus map → map gStalled_replication_fork*@Nucleus map
    16. gBER_B-glyc_DNA_st2*@Nucleus map → map gTLS_DNA_st1*@Nucleus map